Custom bioinformatics tools and pipelines

From small scripts to fully integrated analysis platforms, Sycomia develops bioinformatics tools designed to streamline your research.

Tools designed for your team

// scripts

Prepare and check your data

Clean, commented preprocessing and quality control scripts, ready to fit into your routine.

  • Reading and cleaning common formats
  • Automatic quality control
  • Easy-to-change parameters
// pipelines

Automate your analyses

Reproducible workflows that run your analyses the same way every time, from raw data to report.

  • Nextflow or Snakemake
  • Docker or Apptainer containers
  • Every step traced
app.sycomia.com
Example dashboard (simulated data)
// dashboards

Explore your results without coding

Interactive web applications so that biologists and clinicians can explore results themselves.

  • Filters, gene search, charts
  • Access from a browser
  • Installed on your servers
Open the dashboard

What you receive

  • DocumentationInstallation, usage and examples.
  • TestsTo check the tool works on your data.
  • A handoverAnd, if needed, training for your team.

TechnologiesPythonRBashNextflowSnakemakeDockerApptainerShinyStreamlitGit

Frequently asked questions

Another question about your project? Write to us, an expert will answer.

Contact us
What kind of tools can you develop?

Preprocessing and quality control scripts, reproducible analysis pipelines, and data visualization tools and interactive dashboards, from a small script to a complete platform.

Can you train our team to use the tool?

Yes. Documentation, support or training can be included in the project, as detailed in the quote.

Where is the tool installed?

On your infrastructure: your servers or computing cluster. Pipelines come with Docker or Apptainer containers, which makes them easy to install on your infrastructure.

Can you take over an existing script or pipeline?

Yes. We can audit an existing tool, make it more robust, document it or extend it, for example by turning it into a reproducible Nextflow or Snakemake pipeline.

Need a custom script or a full project?

Tell us about your data and what you need: let’s build it together.