Bioinformatics services for your omics data
From the analysis of your genomics, metagenomics, transcriptomics, proteomics and epigenetics data to artificial intelligence, consulting and custom tools, Sycomia supports your projects from the biological question to interpreted results.
Omics data analysis
End-to-end analysis of your data, short or long reads, bulk or single-cell, with a scientific report that answers your biological question.
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Genomics
Decoding DNA to drive discovery
- Variant calling and annotation (WGS, WES)
- ctDNA and liquid biopsy
- Genome assembly and annotation
- Comparative genomics: orthologs, synteny, phylogenomics
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Metagenomics
Understanding microbial communities
- 16S amplicon sequencing: ASVs and taxonomy
- Alpha and beta diversity, PERMANOVA
- Differential abundance between conditions
- Shotgun metagenomics: species and functions
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Transcriptomics
Revealing genes in action
- Bulk RNA-seq: differential expression, GO, GSEA
- Single-cell RNA-seq: clustering, annotation, trajectories
- Spatial transcriptomics
- Gene fusions, isoforms and deconvolution
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Proteomics
Exploring proteins and their functions
- Affinity proteomics: Olink®, SomaScan®
- Untargeted mass spectrometry
- Interaction networks and functional enrichment
- Integration with transcriptomics
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Epigenetics
Uncovering the marks that shape DNA
- DNA methylation: WGBS, RRBS, Nanopore
- Chromatin: ATAC-seq, ChIP-seq, CUT&Tag
- 3D genomics: Hi-C, TADs, loops
- Single-cell epigenomics
Expertise beyond analysis
Artificial intelligence, consulting, training and software development, to go further with your data and strengthen your teams.
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AI modeling
Predicting and innovating with AI
- Patient stratification and treatment response prediction
- Biomarker and molecular signature discovery
- Custom prediction and classification models
- Fine-tuning on your data, data engineering
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Consulting & training
Gaining expertise and autonomy
- Expert advice on analyses and project strategy
- Pipeline design (Nextflow, Snakemake)
- Training in Python, R, Bash, Git and Docker
- Hands-on courses: RNA-seq, single-cell, AI for biology
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Tool development
From small scripts to full platforms
- Data preprocessing and quality control scripts
- Reproducible analysis pipelines
- Data visualization and interactive dashboards
Your project, your quote
Every project is unique: our quotes follow its ambitions and constraints, with clarity, fairness and flexibility.
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Tailored to your project
Our fees are never one-size-fits-all: they depend on the nature, complexity and goals of your project.
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Clear and detailed
Each quote details the expertise, technologies and resources involved, so you only pay for what matters to your objectives.
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No hidden costs
Any additional cost, such as an extra analysis or a project extension, is discussed openly and agreed in advance.
Frequently asked questions
Which omics data do you analyze?
Genomics and metagenomics, transcriptomics (bulk, single-cell and spatial), proteomics (affinity and mass spectrometry) and epigenetics, from short or long reads, as well as the integration of several omics layers and clinical data.
Can you help us before the data is generated?
Yes. We can advise you on study design and technology choice before sequencing, so that your data can really answer your biological question.
Is my data kept confidential and secure?
We sign an NDA on request, before any exchange of data or confidential information. Data is processed on our own servers, clinical data is hosted in France by a certified health data host (HDS), and your data is deleted within 30 days of the end of the project, or earlier on request, in line with the GDPR.
How is the price of a project determined?
After a first discussion of your project, we send you a detailed quote, tailored to your data, your questions and the analyses required. Any additional cost is agreed in advance.
What are your turnaround times?
We take on your project quickly. Timelines depend on the analyses defined in the analysis plan: we agree on them with you before the project starts, then keep you informed of progress at each step.
What do I receive at the end of the project?
A scientific report with interpreted results (methods, results and interpretation, in HTML or PDF), publication-ready figures, result files and a quality control assessment. We then walk you through the results in a dedicated video meeting. See an example report.
Not sure which analysis you need?
Tell us about your biological question and your data: we will help you define the right strategy.